| Secretary of State | Timothy Pickering (Cont.) John Marshall, 1800 |
| Secretary of the Treasury | Oliver Wolcott, Jr. (Cont.) Samuel Dexter, 1801 |
| Secretary of War | James McHenry (Cont.) Samuel Dexter, 1800 |
| Attorney General | Charles Lee (Cont.) |
| Secretary of the Navy | Benjamin Stoddert, 1798 |